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" Marine genomics "
edited by Sarah J. Bourlat, Department of Marine Sciences, University of Gothenburg, Gothenburg, Sweden.
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BL
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| Record Number
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569188
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| Doc. No
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b398407
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| Uniform Title
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Marine genomics (Bourlat)
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| Title & Author
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Marine genomics : methods and protocols /\ edited by Sarah J. Bourlat, Department of Marine Sciences, University of Gothenburg, Gothenburg, Sweden.
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| Publication Statement
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New York :: Humana Press/Springer Science+Business Media LLC,, [2016]
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| Series Statement
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Methods in molecular biology,; 1452
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Springer protocols
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| ISBN
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9781493937721
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: 1493937723
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: 9781493937745
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: 149393774X
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| Notes
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"This Humana Press imprint is published by Springer Nature"--Title page verso.
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| Bibliographies/Indexes
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Includes bibliographical references and index.
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| Contents
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1. Sampling of riverine or marine bacterial communities in remote locations : from field to publication / Katja Lehmann -- 2. DNA extraction protocols for whole-genome sequencing in marine organisms / Marina Panova, Henrik Aronsson, R. Andrew Cameron, Peter Dahl, Anna Godhe, Ulrika Lind, Olga Ortega-Martinez, Ricardo Pereyra, Sylvie V.M. Tesson, Anna-Lisa Wrange, Anders Blomberg, and Kerstin Johannesson -- 3. High-throughput sequencing of complete mitochondrial genomes / Andrew George Briscoe, Kevin Peter Hopkins, and Andrea Waeschenbach -- 4. Phylogenomics using transcriptome data / Johanna Taylor Cannon and Kevin Michael Kocot -- 5. SNP discovery using next generation transcriptomic sequencing / Pierre De Wit -- 6. SNP arrays for species identification in salmonids / Roman Wenne, Agata Drywa, Matthew Kent, Kristil Kindem Sundsaasen, and Sigbjørn Lien -- 7. The next-generation PCR-based quantification method for ambient waters : digital PCR / Yiping Cao, John F. Griffith, and Stephen B. Weisberg -- 8. Using environmental DNA for invasive species surveillance and monitoring / Andrew R. Mahon and Christopher L. Jerde -- 9. Microarrays/DNA chips for the detection of waterborne pathogens / Filipa F. Vale -- 10. DNA barcoding of marine metazoans / Dirk Steinke, Sean W.J. Prosser, and Paul D.N. Hebert -- 11. DNA barcoding marine biodiversity : steps from mere cataloguing to giving reasons for biological differences / Mikko Nikinmaa and Miriam Götting -- 12. Metabarcoding marine sediments : preparation of amplicon libraries / Vera G. Fonseca and Delphine Lallias -- 13. Preparation of amplicon libraries for metabarcoding of marine eukaryotes using Illumina MiSeq : the dual-PCR method / Sarah J. Bourlat, Quiterie Haenel, Jennie Finnman, and Matthieu Leray -- 14. Preparation of amplicon libraries for metabarcoding of marine eukaryotes using Illumina MiSeq : the adapter ligation method / Matthieu Leray, Quiterie Haenel, and Sarah J. Bourlat -- 15. Visualizing patterns of marine eukaryotic diversity from metabarcoding data using QIIME / Matthieu Leray and Nancy Knowlton -- 16. Analysis of Illumina MiSeq metabarcoding data : application to benthic indices for environmental monitoring / Eva Aylagas and Naiara Rodríguez-Ezpeleta.
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| Subject
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Marine biology-- Research-- Methodology.
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Marine organisms-- Genome mapping, Laboratory manuals.
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Marine organisms-- Genetics-- Research, Laboratory manuals.
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Genomics, Laboratory manuals.
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Bioinformatics.
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Sequence Analysis, DNA-- methods.
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Aquatic Organisms-- genetics.
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Genomics-- methods.
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| Added Entry
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Bourlat, Sarah J.
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