|
" Computational biology of transcription factor binding / "
edited by Istvan Ladunga.
| Document Type
|
:
|
BL
|
| Record Number
|
:
|
615440
|
| Doc. No
|
:
|
dltt
|
| Title & Author
|
:
|
Computational biology of transcription factor binding /\ edited by Istvan Ladunga.
|
| Publication Statement
|
:
|
New York, NY :: Humana Press,, c2010.
|
| Series Statement
|
:
|
Springer protocols
|
|
|
:
|
Methods in molecular biology,; 674
|
| Page. NO
|
:
|
xi, 454 p. :: ill. ;; 26 cm.
|
| ISBN
|
:
|
9781607618539
|
|
|
:
|
: 1607618532
|
| Bibliographies/Indexes
|
:
|
Includes bibliographical references and index.
|
| Contents
|
:
|
An overview of the computational analyses and discovery of transcription factor binding sites -- Components and mechanisms of regulation of gene expression -- Regulatory regions in DNA: promoters, enhancers, silencers, and insulators -- Three-dimensional structures of DNA-bound transcriptional regulators -- Identification of promoter regions and regulatory sites -- Motif discovery using expectation maximization and Gibbs' sampling -- Probabilistic approaches to transcription factor binding site prediction -- The motif tool assessment platform (MTAP) for sequence-based transcription factor binding site prediction tools -- Computational analysis of ChIP-seq data -- Probabilistic peak calling and controlling false discovery rate estimations in transcription factor binding site mapping from ChIP-seq -- Sequence analysis of chromatin immunoprecipitation data for transcription factors -- Inferring protein-DNA interaction parameters from SELEX experiments -- Kernel-based identification of regulatory modules -- Identification of transcription factor binding sites derived from transposable element sequences using ChIP-seq -- Target gene identification via nuclear receptor binding site prediction -- Computing chromosome conformation -- Large-scale identification and analysis of C-proteins -- Evolution of cis-regulatory sequences in drosophila -- Regulating the regulators: modulators of transcription factor activity -- Annotating the regulatory genome -- Computational identification of plant transcription factors and the construction of the plant TFDB database -- Practical computational methods for regulatory genomics: a cisGRN-lexicon and cisGRN-browser for gene regulatory networks -- Reconstructing transcriptional regulatory networks using three-way mutual information and bayesian networks -- Computational methods for analyzing dynamic regulatory networks.
|
| Subject
|
:
|
Computational biology.
|
| Subject
|
:
|
Transcription factors.
|
| Subject
|
:
|
Computational Biology.
|
| Subject
|
:
|
Transcription Factors.
|
| Added Entry
|
:
|
Ladunga, Istvan.
|
| |