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" Bioinformatics for DNA sequence analysis / "
edited by David Posada
Document Type
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BL
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Record Number
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695172
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Doc. No
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b517361
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Title & Author
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Bioinformatics for DNA sequence analysis /\ edited by David Posada
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Publication Statement
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New York :: Humana,, c2009
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Series Statement
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Methods in molecular biology,; v. 537
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Springer protocols
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Page. NO
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xiii, 354 p. ;; ill
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ISBN
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1588299104 (hbk. : alk. paper)
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: 1597452513 (e-ISBN)
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: 9781588299109 (hbk. : alk. paper)
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: 9781597452519 (e-ISBN)
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Bibliographies/Indexes
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Includes bibliographical references and index
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Contents
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Similarity searching using BLAST / Kit J. Menlove, Mark Clement, and Keith A. Crandall -- Gene orthology assessment with OrthologID / Mary Egan ... [et al.] -- Multiple alignment of DNA sequences with MAFFT / Kazutaka Katoh, George Asimenos, and Hiroyuki Toh -- SeqVis : a tool for detecting compositional heterogeneity among aligned nucleotide sequences / Lars Sommer Jermiin ... [et al.] -- Selection of models of DNA evolution with jModelTest / David Posada -- Estimating maximum likelihood phylogenies with PhyML / Stéphane Guindon ... [et al.] -- Trees from trees : construction of phylogenetic supertrees using clann / Christopher J. Creevey and James O. McInerney -- Detecting signatures of selection from DNA sequences using datamonkey / Art F.Y. Poon, Simon D.W. Frost, and Sergei L. Kosakovsky Pond -- Recombination detection and analysis using RDP3 / Darren P. Martin -- CodonExplorer : an interactive online database for the analysis of codon usage and sequence composition / Jesse Zaneveld ... [et al.] -- Genetic code prediction for metazoan mitochondria with GenDecoder / Federico Abascal, Rafael Zardoya, and David Posada -- Computational gene annotation in new genome assemblies using GeneID / Enrique Blanco and Josep F. Abril -- Promoter analysis : gene regulatory motif identification with A-GLAM / Leonardo Mariño-Ramírez ... [et al.] -- Analysis of genomic DNA with the UCSC Genome Browser / Jonathan Pevsner -- Mining for SNPs and SSRs using SNPServer, dbSNP and SSR taxonomy tree / Jacqueline Batley and David Edwards -- Analysis of transposable element sequences using CENSOR and RepeatMasker / Ahsan Huda and I. King Jordan -- DNA sequence polymorphism analysis using DnaSP / Julio Rozas
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Subject
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Bioinformatics, Laboratory manuals
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Subject
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Nucleotide sequence, Laboratory manuals
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Subject
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Sequence Analysis, DNA-- methods
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Subject
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Computational Biology-- methods
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Dewey Classification
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570
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LC Classification
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QH324.2.B5475 2009
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NLM classification
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W1ME9616J v.537 2009
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QU 450B6157 2009
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Added Entry
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Posada, David
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