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" Cap-analysis gene expression (CAGE) : "
editor, Piero Carninci.
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BL
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| Record Number
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719607
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b539299
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| Main Entry
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editor, Piero Carninci.
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| Title & Author
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Cap-analysis gene expression (CAGE) : : the science of decoding genes transcription\ editor, Piero Carninci.
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| Publication Statement
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Singapore: Pan Stanford, ©2010.
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(xv, 266 pages) : illustrations (some color)
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| ISBN
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0429065752
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: 0429533659
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: 0429548354
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: 9780429065750
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: 9780429533655
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: 9780429548352
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: 9789814241359
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: 9814241350
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| Contents
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Cap analysis gene expression (CAGE) --;Tagging transcription starting sites with CAGE --;Construction of CAGE libraries --;Transcriptome and genome characterization using massively parallel paired end tag (PET) sequencing analysis --;New era of genome-wide expression analysis --;Computational tools to analyze CAGE --;introduction to PART II --;Extraction and quality control of CAGE tags --;Setting CAGE tags in a genomic context --;Using CAGE data for quantitative expression --;Databases for CAGE visualization and analysis --;Computational methods to identity transcription factor binding sites using CAGE information --;Transcription regulatory networks analysis using CAGE --;Gene expression ontologies and tag-based expression profiling --;Lessons learned from genomic CAGE --;Future challenges in CAGE analysis --;Comparative genomics and mammalian promoter evolution --;The impact of CAGE data on understanding macrophage transcriptional biology.
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| Abstract
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A guide for the bioinformatics tools for the analysis of the obtained tags, including the design of the software, the sources and web information where they can be downloaded. It provides examples of the application of these technologies to identify promoters, annotate genomes, identify new RNAs and reconstruct models of transcriptional control.
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| Subject
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Gene expression.
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Gene Expression.
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SCIENCE -- Life Sciences -- Genetics Genomics.
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| LC Classification
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QH450.E358 2010
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| Added Entry
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Piero Carninci
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