| Document Type
|
:
|
BL
|
| Record Number
|
:
|
889319
|
| Title & Author
|
:
|
The role of water in ATP hydrolysis energy transduction by protein machinery /\ Makoto Suzuki, editor.
|
| Publication Statement
|
:
|
Singapore :: Springer,, 2018.
|
| Page. NO
|
:
|
1 online resource
|
| ISBN
|
:
|
9789811084591
|
|
|
:
|
: 9789811084607
|
|
|
:
|
: 9789811341571
|
|
|
:
|
: 9811084599
|
|
|
:
|
: 9811084602
|
|
|
:
|
: 9811341575
|
|
|
:
|
9789811084584
|
|
|
:
|
9811084580
|
| Contents
|
:
|
Intro; Preface; Contents; Basis of ATP Hydrolysis Reaction; 1 Free Energy Analyses for the ATP Hydrolysis in Aqueous Solution by Large-Scale QM/MM Simulations Combined with a Theory of Solutions; 1.1 Introduction; 1.2 Theoretical Method; 1.2.1 Real-Space Grid Approach; 1.2.2 QM/MM Approach; 1.2.3 QM/MM-ER Method; 1.2.4 Free Energy of Hydrolysis; 1.3 Computational Details; 1.4 Results and Discussion; 1.5 Conclusion; References; 2 Role of Metal Ion Binding and Protonation in ATP Hydrolysis Energetics; Abstract; 2.1 Introduction; 2.2 Theory; 2.3 Results and Discussions.
|
|
|
:
|
2.3.1 ATP Hydrolysis Energetics at pH 7.02.3.2 Apparent pKa's for ATP, ADP, and Pi; 2.3.3 Apparent pKMg's for ATP, ADP, and Pi; 2.3.4 Effect of Other Metal Ions on ATP Hydrolysis Energetics; 2.4 Conclusions; References; 3 Spatial Distribution of Ionic Hydration Energy and Hyper-Mobile Water; Abstract; 3.1 Introduction; 3.2 Hydration Measurement by Dielectric Relaxation Spectroscopy; 3.2.1 Preparation of Aqueous Solutions of Salts; 3.2.2 Dielectric Spectroscopy: Experimental Method; 3.2.3 Dielectric Spectroscopy: Data Analysis; 3.2.4 Hydration Properties of Salt Solutions.
|
|
|
:
|
4 Theoretical Studies of Strong Attractive Interaction Between Macro-anions Mediated by Multivalent Metal Cations and Related Association Behavior: Effective Interaction Between ATP-Binding Proteins Can Be Regulated by HydrolysisAbstract; 4.1 Introduction; 4.2 Condensation of Acidic Proteins by Multivalent Metal Cations; 4.3 Integral Equation Theory for Liquids; 4.4 Potential of Mean Force (PMF) Between Macro-anions; 4.5 Association and Dissociation Model Mechanism for the Engine of a Protein Linear Motor; 4.6 Summary; References.
|
|
|
:
|
5 Statistical Mechanical Integral Equation Approach to Reveal the Solvation Effect on Hydrolysis Free Energy of ATP and Its AnalogueAbstract; 5.1 Introduction; 5.2 The 3D-RISM Theory; 5.3 Hybrid 3D-RISM and Electronic Structure Theories; 5.4 Hydrolysis of Pyrophosphate; 5.5 Hydrolysis of ATP; 5.6 Summary; References; 6 A Solvent Model of Nucleotide-Protein Interaction-Partition Coefficients of Phosphates Between Water and Organic Solvent; Abstract; 6.1 Introduction; 6.2 Measurement of Partition Coefficients of Phosphoric Compounds Between Water and Alkylamine/Octanol.
|
| Abstract
|
:
|
This book introduces recent progress in biological energetics from ATP hydrolysis to molecular machineries. The role of water is now recognized to be essential in biological molecular energetics. Although energetics is a rather distant field to many biologists, any working models for protein machineries such as protein motors, transporters, and other enzymes must be consistent with their energetics. Therefore, the book is intended to help scientists build systematic models of biomolecular functions based on three categories: (1) ATP hydrolysis reactions including ionic hydration and protonation-deprotonation of biomolecules, (2) protein-ligand/protein-protein interactions including hydration-dehydration processes, and (3) functioning mechanisms of protein machineries based on water functions.
|
| Subject
|
:
|
Adenosine triphosphate.
|
| Subject
|
:
|
Hydrolysis.
|
| Subject
|
:
|
Adenosine triphosphate.
|
| Subject
|
:
|
Hydrolysis.
|
| Subject
|
:
|
SCIENCE-- Life Sciences-- Biochemistry.
|
| Subject
|
:
|
Chemistry.
|
| Subject
|
:
|
Biological and Medical Physics, Biophysics.
|
| Subject
|
:
|
Physical Chemistry.
|
| Subject
|
:
|
Protein-Ligand Interactions.
|
| Dewey Classification
|
:
|
572/.475
|
| LC Classification
|
:
|
QP625.A3
|
| Added Entry
|
:
|
Suzuki, Makoto
|